PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013617200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 429aa    MW: 47238.9 Da    PI: 6.6778
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013617200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.1e-17134183155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_013617200.1 134 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 183
                     78*******************......55************************997 PP

2AP243.29.7e-14227277155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  XP_013617200.1 227 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 277
                     89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-9134183IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-16134192IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-17135191IPR001471AP2/ERF domain
CDDcd000181.75E-11135190No hitNo description
SMARTSM003803.0E-32135197IPR001471AP2/ERF domain
PROSITE profilePS5103217.622135191IPR001471AP2/ERF domain
CDDcd000183.42E-26227287No hitNo description
SuperFamilySSF541712.35E-17227287IPR016177DNA-binding domain
PfamPF008472.6E-9227277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-16228285IPR001471AP2/ERF domain
SMARTSM003804.5E-32228291IPR001471AP2/ERF domain
PROSITE profilePS5103215.672228285IPR001471AP2/ERF domain
PRINTSPR003674.7E-6229240IPR001471AP2/ERF domain
PRINTSPR003674.7E-6267287IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MWDLNDSPHQ TLVEEESEEL CYSSPGKRVG SFSNSSSSAV VIEDGSDDDE PNRVRPNNPL  60
VTHQFFPEME TSVGDDGGGG PGSGFPRSHW FGVKFCQSDL ATGSSAGKPA TVAAVVEPAQ  120
PLKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK  180
FRGVEADINF TIEDYDDDLK QQMTNLTKEE FVHVLRRQST GFPRGSSKYR GVTLHKCGRW  240
EARMGQFLGK KYVYLGLFDT EVEAARAYDK AAIKCNGKDA VTNFDPSIYD DELNAESSGN  300
SIQQDHNLDL SLGNSVNSKQ KGQDMRLKMN QQETLHPNEI LGLGQTGMVN HIPNSNLQFP  360
GSSNIGGGGG FSLFPVAENH RFDGRTTTNQ VLANAAASSG FSPHHHNQIF NSTSTSHQNW  420
LQTNGFQPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0418870.0JX041887.1 Brassica juncea cultivar Varuna AP2 variant 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617200.10.0PREDICTED: floral homeotic protein APETALA 2 isoform X1
RefseqXP_013722962.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479270.0AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0D3A1C00.0A0A0D3A1C0_BRAOL; Uncharacterized protein
STRINGBra011741.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.20.0AP2 family protein